U.S. Afghan commander cleared in Petraeus email case

U.S. Marine Corp. Gen. John Allen in the Pentagon Briefing room, May 23, 2012 in Arlington, Virginia. / Mark Wilson/Getty Images

Updated 7:15 PM ET

WASHINGTON A Pentagon investigation has cleared Gen. John Allen, the top U.S. commander in Afghanistan, of professional misconduct in exchanging emails with a civilian woman linked to the sex scandal that led retired Gen. David Petraeus to resign as CIA director.

Pentagon press secretary George Little said Tuesday that Defense Secretary Leon Panetta was informed of the conclusion by the Pentagon's inspector general.

"The secretary was pleased to learn that allegations of professional misconduct were not substantiated by the investigation," Little said, adding that Panetta has "complete confidence in the continued leadership" of Allen.

The matter was referred to the Pentagon in November by the FBI during the course of its investigation of emails between Petraeus and his biographer-turned-paramour, Paula Broadwell. The FBI turned up thousands of emails between Allen and Jill Kelley, who was said to have received threatening emails from Broadwell.

• Panetta: Don't jump to conclusions on Gen. Allen
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At the time, officials said 20,000 to 30,000 pages of emails and other documents from Allen's communications with Kelley between 2010 and 2012 were in question.

Shortly after being contacted by the FBI, Defense Secretary Leon Panetta referred the matter to the Pentagon's inspector general, while expressing confidence in Allen and deciding that he would remain in Kabul as commander of all allied forces in Afghanistan.

At the same time, Allen's nomination to be the next U.S. commander of NATO forces in Europe was put on hold. The officials said Tuesday the White House had not decided whether to go forward with the nomination.

When the matter arose in November, defense officials expressed concern that at least some of the emails might be judged "inappropriate," but the inspector general determined that such concerns were "unsubstantiated," officials said Tuesday.

Maj. David Nevers, a spokesman for Allen, said he had no immediate comment on reports of his being exonerated.

Allen's successor in Kabul, Marine Gen. Joseph Dunford, has been confirmed by the Senate and is scheduled to take over on Feb. 10.

Allen had maintained he did nothing wrong in the Kelley communications, but he has not spoken publicly about the specifics of his email exchanges with her. She served as a sort of social ambassador for U.S. Central Command in Tampa, Fla.

Petraeus is a former Central Command commander, and Allen is a former deputy commander there.

[brynaweiss]

Agreed! What the hell could have been so important to cover that incredible number of pages?! When did he work!

[RetiredArmy3333]

It is a violation of the UCMJ to use a Govt. computer for personal use. I have seen many troops charged for doing what Gen. Allen did. Yet, he walks??? I used to be a Recruiter for the military, never again. I hope everyone avoids it like the plague.

[pwgrant]

"...20,000 to 30,000 pages of emails and other documents from Allen's communications with Kelley between 2010 and 2012 were in question. that many? good gawd man?! that;s reason enough to can him